PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00494g00102.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 276aa    MW: 30643.5 Da    PI: 9.0628
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00494g00102.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Peaxi162Scf00494g00102.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                              79***********************************9************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.042161IPR017930Myb domain
SuperFamilySSF466897.88E-15258IPR009057Homeodomain-like
SMARTSM007171.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-14556IPR009057Homeodomain-like
CDDcd116601.12E-20657No hitNo description
PfamPF139211.8E-8862No hitNo description
SMARTSM005264.9E-14114179IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.989116184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.9E-13116191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF466897.88E-15118151IPR009057Homeodomain-like
PfamPF005381.6E-8119176IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
NGQGPRDKSR TPKPKANPDA AAAPSQAPVS STPVPQDASA DTIMEDSSKC ALDGKTASKY  120
NQMIYDALSS LKDPNGSDTS TIVSFIEQRQ DVPQNFRRLL TARLRRLVQQ DKLEKIDNCY  180
RIKKEVLEKT KTATPKQNLV GPRQFPNSSY LGDTVEEATA TAVHKVADAE NKSFVAAEAV  240
KEAERVSKMA EDSERLLQLA KDIFDKCSHG DIMLMA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604177.11e-161PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016469797.11e-161PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A0V0I2T01e-155A0A0V0I2T0_SOLCH; Putative telomere repeat-binding factor 4-like
STRINGPOPTR_0018s07040.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-59MYB_related family protein